In this study, we used a cross-sectional design in which anesthetized mice—100 mg/kg ketamine (Covetrus, Portland, ME, USA) and 6 mg/kg xylazine (MWI Animal Health, Boise, ID, USA)—were examined by OCT (Envisu UHR2200; Bioptigen, Durham, NC, USA) in the morning (i.e. before noon). Mice were dark adapted overnight, and the following day, room-light adapted for just 1 hour or 5 hours (B6J only) prior to imaging. To dilate the iris, 1% atropine sulfate was used, and Systane Ultra (Alcon, Geneva, Switzerland) was used to lubricate the eyes.
From the central retina, we collected radial volume scans with following parameters: A-scans/B-scans = 1000 lines; B-scans/volume = 1000 scans; and frames/B-scan = 1 frame. To minimize the effects of noise, and boost the signal, 100 images are registered and averaged before being analyzed. These 100 images were extracted from B-scan numbers 450 to 549 (representing inferior–superior retina) were registered (in-house script for R; R Foundation for Statistical Computing, Vienna, Austria). Briefly, first-pass rigid body registration with RNiftyReg (function in R) was used to rotate the image and interpolate signal at each pixel. Next, non-rotational rigid-body approaches (at the level of a given row or column of pixels) were applied three times. The 100 images were visually compared as a final step before averaging. A representative image of the outer retina and a set of axial reflectance profiles are shown in
Figure 1.