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ARVO Annual Meeting Abstract July 2018

Three-dimensional retinal organoids from induced pluripotent stem cells derived from rd16 mouse model of CEP290 -LCA

Holly Chen; Koray Dogan Kaya; Coco Ke Jiang; Anupam Mondal; Matthew Brooks; Jung-woong Kim; Manju Swaroop; Wei Zheng; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2018; 59(9):575. doi:

ARVO Annual Meeting Abstract July 2018

Isolated population helps tease out a third locus underlying a multigenic form of canine RPGRIP1 cone-rod dystrophy

Keiko Miyadera; Leonardo Murgiano; Courtney Spector; Felipe Pompeo Marinho; Valerie Dufour; Rueben G Das; Matthew Brooks; Anand Swaroop; Gustavo D Aguirre

Invest. Ophthalmol. Vis. Sci.. 2018; 59(9):1438. doi:

ARVO Annual Meeting Abstract July 2018

Epigenomic reconfiguration during aging of rod photoreceptors

Ximena Corso Diaz; Ryan Rebernick; Catherine Jaeger; Freekje Van Asten; Matthew Brooks; Tiziana Cogliati; Vijender Chaitankar; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2018; 59(9):3490. doi:

Biochemistry and Molecular Biology September 2017

Regulation of Noncoding Transcriptome in Developing Photoreceptors by Rod Differentiation Factor NRL

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Lina Zelinger; Gökhan Karakülah; Vijender Chaitankar; Jung-Woong Kim; Hyun-Jin Yang; Matthew J. Brooks; Anand Swaroop
TAGS: retinal cone, genes, photoreceptors, rod photoreceptors, proteins, rna, regulation
Invest. Ophthalmol. Vis. Sci.. 2017; 58(11):4422-4435. doi: 10.1167/iovs.17-21805

Includes: Supplemental Content

ARVO Annual Meeting Abstract June 2017

A Search for Common Pre-apoptotic Signals/Pathways in Mouse Models of Retinal Degeneration

Coco Ke Jiang; Matthew Brooks; Gökhan Karakülah; Linn Gieser; Jung-Woong Kim; Alexis Boleda; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2017; 58(8):267. doi:

ARVO Annual Meeting Abstract June 2017

Genetic influences on the nuclear architecture of photoreceptors

Hannah Fann; Dustin Thad Whitaker; Matthew Brooks; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2017; 58(8):343. doi:

ARVO Annual Meeting Abstract June 2017

Reference Transcriptome Landscape of Adult Human Retina

Margaret Risa Starostik; Rinki Ratnapriya; Rebecca Kapphahn; Ashley Walton; Alexandra Pietraszkiewicz; Matthew Brooks; Sandra Rocio Montezuma; Lars Fritsche; Goncalo Abecasis; Deborah A Ferrington; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2017; 58(8):567. doi:

ARVO Annual Meeting Abstract June 2017

The genetic basis of photoreceptor synaptic terminal structure

Dustin Thad Whitaker; Hannah Fann; Passley Jordan Hargrove; Amal Alsufyani; Matthew Brooks; Soo-Young Kim; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2017; 58(8):1026. doi:

ARVO Annual Meeting Abstract June 2017

Transcriptional and DNA methylation changes during aging in rod photoreceptors

Ximena Corso Diaz; Freekje Van Asten; Tiziana Cogliati; Jennifer Joanna Barb; Norimoto Gotoh; Matthew Brooks; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2017; 58(8):1844. doi:

ARVO Annual Meeting Abstract June 2017

De-novo assembly of mouse photoreceptor transcriptome identifies un-annotated lncRNAs regulated by NRL

Lina Zelinger; Gökhan Karakülah; Vijender Chaitankar; Jung-Woong Kim; Hyun-Jin Yang; Matthew Brooks; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2017; 58(8):2488. doi:

ARVO Annual Meeting Abstract June 2017

Selection of candidate genes implicated in cone survival by photoreceptor transcriptome analysis

Samantha PAPAL; Mackenzie Tennison; Vijender Chaitankar; Hyun-Jin Yang; Matthew Brooks; Jung-Woong Kim; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2017; 58(8):4531. doi:

ARVO Annual Meeting Abstract June 2017

Transcriptome analysis of AMD retina reveals convergent molecular pathology

Rinki Ratnapriya; Margaret Risa Starostik; Rebecca Kapphahn; Ashley Walton; Alexandra Pietraszkiewicz; Matthew Brooks; Sandra Rocio Montezuma; Lars Fritsche; Goncalo Abecasis; Deborah A Ferrington; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2017; 58(8):4772. doi:

ARVO Annual Meeting Abstract September 2016

Identification and Characterisation of Novel Cone Photoreceptor-Enriched Factors Conserved in Zebrafish, Mouse and Human

Andrew Smith; Conor Daly; Ross F Collery; Vijender Chaitankar; Matthew Brooks; Tiziana Cogliati; Anand Swaroop; Breandan N Kennedy

Invest. Ophthalmol. Vis. Sci.. 2016; 57(12):572. doi:

Articles April 2016

Treatment Paradigms for Retinal and Macular Diseases Using 3-D Retina Cultures Derived From Human Reporter Pluripotent Stem Cell Lines

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Rossukon Kaewkhaw; Manju Swaroop; Kohei Homma; Jutaro Nakamura; Matthew Brooks; Koray Dogan Kaya; Vijender Chaitankar; Sam Michael; Gregory Tawa; Jizhong Zou; Mahendra Rao; Wei Zheng; Tiziana Cogliati; Anand Swaroop
TAGS: photoreceptors, retina, stem cells, pluripotent, screening, macular disorders
Invest. Ophthalmol. Vis. Sci.. 2016; 57(5):ORSFl1-ORSFl11. doi: 10.1167/iovs.15-17639

ARVO Annual Meeting Abstract June 2015

Integrated transcriptome and epigenome analysis of developing mouse rod photoreceptors reveals dynamic epigenetic control of lineage priming and developmental plasticity

Hyun-Jin Yang; Jung-Woong Kim; Vijender Chaitankar; Matthew Brooks; Hong Hao; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2015; 56(7 ):437. doi:

ARVO Annual Meeting Abstract June 2015

RetSeq: Next Generation Sequencing Database for Exploring Retinal Development, Aging and Disease.

Koray Dogan Kaya; Matthew Brooks; Hyun-Jin Yang; Jung-Woong Kim; Gokhan Karakulah; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2015; 56(7 ):1240. doi:

ARVO Annual Meeting Abstract June 2015

A possible role for lnc-RNA in mouse and human retina

Lina Zelinger; Jung-Woong Kim; Hyun-Jin Yang; Matthew Brooks; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2015; 56(7 ):2602. doi:

ARVO Annual Meeting Abstract June 2015

Transcriptional regulation of the Müller glia stem cell response to acute light injury

Christopher Sifuentes; Jung-Woong Kim; Hyun-Jin Yang; Matthew Brooks; Anand Swaroop; Pamela Raymond; RC

Invest. Ophthalmol. Vis. Sci.. 2015; 56(7 ):5486. doi:

ARVO Annual Meeting Abstract June 2015

Defining cell classes in the neural retina

Dustin Thad Whitaker; Jung-Woong Kim; Matthew Brooks; Anand Swaroop

Invest. Ophthalmol. Vis. Sci.. 2015; 56(7 ):5491. doi:

Biochemistry and Molecular Biology September 2014

Deletion of Aryl Hydrocarbon Receptor AHR in Mice Leads to Subretinal Accumulation of Microglia and RPE Atrophy

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Soo-Young Kim; Hyun-Jin Yang; Yi-Sheng Chang; Jung-Woong Kim; Matthew Brooks; Emily Y. Chew; Wai T. Wong; Robert N. Fariss; Rivka A. Rachel; Tiziana Cogliati; Haohua Qian; Anand Swaroop
TAGS: atrophy, electroretinography, microglia, aryl hydrocarbon receptor, mice, retina
Invest. Ophthalmol. Vis. Sci.. 2014; 55(9):6031-6040. doi: 10.1167/iovs.14-15091

Includes: Supplemental Content

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Three-dimensional retinal organoids from induced pluripotent stem cells derived from rd16 mouse model of CEP290 -LCA

Isolated population helps tease out a third locus underlying a multigenic form of canine RPGRIP1 cone-rod dystrophy

Epigenomic reconfiguration during aging of rod photoreceptors

Regulation of Noncoding Transcriptome in Developing Photoreceptors by Rod Differentiation Factor NRL

A Search for Common Pre-apoptotic Signals/Pathways in Mouse Models of Retinal Degeneration

Genetic influences on the nuclear architecture of photoreceptors

Reference Transcriptome Landscape of Adult Human Retina

The genetic basis of photoreceptor synaptic terminal structure

Transcriptional and DNA methylation changes during aging in rod photoreceptors

De-novo assembly of mouse photoreceptor transcriptome identifies un-annotated lncRNAs regulated by NRL

Selection of candidate genes implicated in cone survival by photoreceptor transcriptome analysis

Transcriptome analysis of AMD retina reveals convergent molecular pathology

Identification and Characterisation of Novel Cone Photoreceptor-Enriched Factors Conserved in Zebrafish, Mouse and Human

Treatment Paradigms for Retinal and Macular Diseases Using 3-D Retina Cultures Derived From Human Reporter Pluripotent Stem Cell Lines

Integrated transcriptome and epigenome analysis of developing mouse rod photoreceptors reveals dynamic epigenetic control of lineage priming and developmental plasticity

RetSeq: Next Generation Sequencing Database for Exploring Retinal Development, Aging and Disease.

A possible role for lnc-RNA in mouse and human retina

Transcriptional regulation of the Müller glia stem cell response to acute light injury

Defining cell classes in the neural retina

Deletion of Aryl Hydrocarbon Receptor AHR in Mice Leads to Subretinal Accumulation of Microglia and RPE Atrophy

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